One thing I forgot to mention - if we go to
And then go:
./lsphp5 -i | grep Configuration
Configuration File (php.ini) Path => /usr/local/lsws/lsphp5/lib
Loaded Configuration File => /usr/local/lsws/lsphp5/lib/php.ini
So it seems the config file is loading, however this is not the case from the phpinfo we are running on the vsite.