I have tired a restart, but the website isn't still showing up.
I have just checked my logs and noticed some errors appearing on it. So I am wondering if they are anything to do with it:-
WARN [config:server:listener] No listener is available for normal virtual host!
ERROR [config:server:epsr:lsphp5] invalid path - /usr/local/lsws/fcgi-bin/lsphp5, it cannot be started by Web server!
ERROR [config:scripthandler] Can not find handler with type: 8, name: lsphp5.
ERROR [config:scripthandler] Can not find External Application: lsphp5, type: lsapi
ERROR [config:scripthandler] use static file handler for suffix [php5]
ERROR [config] /c99\": missing closing '"'.
I don't see how that could be it, because the default page for the main website loads up ok, and also the phpinfo.php. But nonthing shows up for the second domain.