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How to disable CGI scripts
To disable CGI scripts such as .cgi .pl etc, You need to turn off CGI with Apache configuration like
Options -ExecCGI
If applying it server wide, you can do it in /etc/httpd/conf/extra/httpd-directories.conf. For control panel users, you may need to modify related template to make the change permanent.
Also, you need to disable user from override “ExecCGI” option, with our DisableCgiOverride option.
<IfModule LiteSpeed> DisableCgiOverride On </IfModule>
http://blog.litespeedtech.com/2013/03/15/closing-the-loopholes-disable-cgi-override/